PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PEQU_33650
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Asparagales; Orchidaceae; Epidendroideae; Vandeae; Aeridinae; Phalaenopsis
Family LSD
Protein Properties Length: 183aa    MW: 19395 Da    PI: 8.7691
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PEQU_33650genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.41.1e-132751125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                C+gCr+lL YP+GA+sV+Ca+C++V
  PEQU_33650 27 CSGCRNLLLYPLGATSVCCAVCNAV 51
                ************************9 PP

2zf-LSD1468.3e-156690125
     zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                CggC+tlL+Y rGA+sV+C++C+t+
  PEQU_33650 66 CGGCHTLLMYIRGATSVQCSCCHTI 90
                ***********************97 PP

3zf-LSD141.42.4e-13142166125
     zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                 Cg+Cr lL+Y +GA+sV+Ca+C++V
  PEQU_33650 142 CGNCRMLLMYQYGARSVKCAVCNFV 166
                 ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.4E-122454IPR005735Zinc finger, LSD1-type
PfamPF069437.5E-112751IPR005735Zinc finger, LSD1-type
Gene3DG3DSA:3.90.10.104.3E-444147No hitNo description
TIGRFAMsTIGR010531.5E-146392IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-126690IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.7E-11139169IPR005735Zinc finger, LSD1-type
PfamPF069431.4E-12142166IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MPVPLAPYPS PPAPFTPPSG GQSQLVCSGC RNLLLYPLGA TSVCCAVCNA VTNVPPPGTE  60
MAQLVCGGCH TLLMYIRGAT SVQCSCCHTI NLALEGGKGL KLLEKLDPKV LKVLVRRGVK  120
LLMGVTTSTH APHTNQVAHV SCGNCRMLLM YQYGARSVKC AVCNFVTSVG VSIHLITRSF  180
TYF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010269986.15e-78PREDICTED: protein LSD1
RefseqXP_010269987.15e-78PREDICTED: protein LSD1
RefseqXP_010269988.15e-78PREDICTED: protein LSD1
SwissprotQ93ZB11e-67LOL1_ARATH; Protein LOL1
SwissprotQ0J7V92e-67LSD1_ORYSJ; Protein LSD1
TrEMBLA0A103XQX82e-76A0A103XQX8_CYNCS; Zinc finger, LSD1-type
TrEMBLW1PNK22e-76W1PNK2_AMBTC; Uncharacterized protein
STRINGVIT_02s0012g00990.t012e-74(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.36e-54lsd one like 1